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[vjreddy12]

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You just select whichever local directory (on your PC) that you want, then highlight the files on the remote (your Xbox). Then you hit CTRL+T to transfer those files. You'll want your entire C and E directories. I don't know for sure but I don't think FlashFXP supports "drag and drop" downloading, though I think it works for uploading if memory serves.

That is how you backup your xbox HD.

Make sure you use slayer's "backup" option. This will backup your eeprom to the Xbox HD. So when you do what chefelf said, you will backup a copy of the  eeprom as well.

Hope that helps...