Nothing new with the exceptions...it's always kinda been a really buggy app, I think I narrowed it down to unsupported characters in the filename, which I'll fix soon, I wasnt expecting this to be released on the main page the way it was, if I knew that, I woulda had this thing working 100%.
What are you trying to organize?
You start by clicking "Go to folder"
It will load your files from that folder, may take a minute depending on how many files you have.
When it's done, you click "Add Infos" (ONLY if you want the folder to be NAMED with the game name/ filename) For example, for title update, file name: TU_15KQ1UH_0000004000000.00000000000G1 without Info's would be organized like this:
C:\path\organized\content\0000000000000000\Sacred 2 Title Update #2\4B4D07D1\000B0000\TU_15KQ1UH_0000004000000.00000000000G1
Without INFO:
C:\path\organized\content\0000000000000000\4B4D07D1\000B0000\TU_15KQ1UH_0000004000000.00000000000G1
The same goes for XBLA games.
Chrysilis: What types of files are you trying to organize? When you click "Organize + Options" it should ask you to select a path for your files to be orgnized into.